PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.770
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 217aa    MW: 23640 Da    PI: 10.8241
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.770genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.61.4e-171861245
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                  ri ++  r+v fskRrng++ KA  LS+LC+aevavi+ s+ g+
  evm.model.AsparagusV1_03.770 18 RIASEEARHVCFSKRRNGVFTKAADLSTLCGAEVAVIVNSPVGN 61
                                  8999************************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MARKKKASHG RKKIAIQRIA SEEARHVCFS KRRNGVFTKA ADLSTLCGAE VAVIVNSPVG  60
NPYSLGSPGV NQVIDRYSTR SPMPLEPNNP YRASRIGELN AQCMELSRRL DLANARKAEM  120
GARVREAAER NPYAKLVDDI DQGLGSRELK VAEEALRGVR AQGERRLGEL MRGGGASSSS  180
VVPVNNAPMA VNPLRMMDGQ FQFGWPDPRF GFGRGF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-25M-type_MADS family protein