PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.772
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 214aa    MW: 23481 Da    PI: 11.2474
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.772genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.84.4e-163376245
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                  ri ++  r+v fskRrn ++ KA  LS+LC+aev vi+ s+ g+
  evm.model.AsparagusV1_03.772 33 RIASEEARHVCFSKRRNSVFTKAADLSTLCGAEVVVIVNSPVGN 76
                                  8999************************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MRRLRAVGFR NTKTKIARKK KASHGRKKIA IQRIASEEAR HVCFSKRRNS VFTKAADLST  60
LCGAEVVVIV NSPVGNPYSL GSPGVNQVID RYSTRSPMPL EPNNPYRASR IGELNAQCME  120
LSRRLDLANA RKAEMGARVR EAAERNPYAK LVDDIDQGLG SRELKVAEEA LRGVRAQGER  180
RLGELMRGGG ASANNASMAV NPLRMMDGQF QFG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-23M-type_MADS family protein