PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.773
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19098.9 Da    PI: 10.078
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.773genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.49e-191866149
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                  +ri ++  r+v fskRrng++ KA  LS+LC+aevavi+ s+ g+ y +
  evm.model.AsparagusV1_03.773 18 ERIASEEARHVCFSKRRNGVFTKATDLSTLCGAEVAVIVNSPAGNPYSF 66
                                  6899****************************************98877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MARKNKATTG GRKKIAIERI ASEEARHVCF SKRRNGVFTK ATDLSTLCGA EVAVIVNSPA  60
GNPYSFGSPG VSEVVNRFLS RNPMRNAEDV YRMSRIRELN AQCMELSRRL DEANAKKAEM  120
ERRVKEVVER NVYCKLAEES EGVGVRELRA VEEAMGGVRM PHWLRVLSID *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-24M-type_MADS family protein