PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.935
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 304aa    MW: 34472.6 Da    PI: 7.5993
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.935genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-1779126148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+W++eEd+ll ++++++G g W++++++ g++R++k+c++rw++yl
  evm.model.AsparagusV1_03.935  79 KGAWSKEEDDLLRKCIEMYGEGKWSSVPNKAGLKRCRKSCRLRWLNYL 126
                                   79********************************************97 PP
2Myb_DNA-binding475.8e-15132177148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++ ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  evm.model.AsparagusV1_03.935 132 RGKFGEDEVDLIIRLHKLLGNR-WSLIAGRIP-GRTANDIKNFWNSHL 177
                                   89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MKLDLPPFLS ALPPVLLLLF LEIFLLLLVE LHVIVVVSAA ASHHRSQKPR RRRAEFFDQL  60
EASTKLTMEP ELKPAGVRKG AWSKEEDDLL RKCIEMYGEG KWSSVPNKAG LKRCRKSCRL  120
RWLNYLSPAI HRGKFGEDEV DLIIRLHKLL GNRWSLIAGR IPGRTANDIK NFWNSHLGKK  180
TEAIDTKNKI RVVKPQPRRV ARSRACGPKD IMQKDEGQDP NNSRALPENN IAEHEEESLN  240
EFMGSSGHDE ELGGLIPYNS SHENLSSLDF GFSYEVEEIM DGALFLRGVE EWEKLLEDTI  300
CLG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-60MYB family protein