PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.1061
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family Trihelix
Protein Properties Length: 214aa    MW: 25752.7 Da    PI: 7.2579
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.1061genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.31.3e-151483886
                       trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                                   mrerg++rsp qCk+kw+nl +ryk  +++e +  +++ ++cp+fd+l+
  evm.model.AsparagusV1_04.1061  1 MRERGYQRSPDQCKCKWKNLVNRYKGKETSETSD-PDNGKHCPFFDELH 48
                                   89******************************96.89999*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MRERGYQRSP DQCKCKWKNL VNRYKGKETS ETSDPDNGKH CPFFDELHAV FTERARNMQH  60
LLESETSTLN HPQKKLKRSS GVRFSDEISD ADDDNEESDD EQHLTKNRKK KTDKIHKPKA  120
ANNNVHELLQ DFLQQQQRAE AQWRDLMERM GQERRMFEKE WQQSMEKLER ERFMLERAWQ  180
EKEEQRRITE ENRALKRDAL LNTLLHKLIQ EDL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
174114KKLKRSSGVRFSDEISDADDDNEESDDEQHLTKNRKKKTDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.17e-26Trihelix family protein