PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.1195
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 299aa    MW: 33599.4 Da    PI: 4.6598
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.1195genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.2e-181663148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEd +l+ +++++G g+W++ +r  g+ R++k+c++rw +yl
  evm.model.AsparagusV1_04.1195 16 KGSWTPEEDMRLITYIHKYGHGNWRALPRLAGLLRCGKSCRLRWINYL 63
                                   799*****************************99************97 PP
2Myb_DNA-binding51.13e-1669114148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                    rg++T+eE++ +++++  lG++ W++Ia++++ gRt++++k+ w+++l
  evm.model.AsparagusV1_04.1195  69 RGNFTEEEEDTIIKLHGVLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114
                                    89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MGRGRAPCCA KVGLNKGSWT PEEDMRLITY IHKYGHGNWR ALPRLAGLLR CGKSCRLRWI  60
NYLRPDIKRG NFTEEEEDTI IKLHGVLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRLTP  120
KDRKSQQKLE EDPSSPSSVT TASVSCSDEG SSKTDKERAE TTVEANNESI EMRDQETSKV  180
EIPVEPNLDF WDVFQDCSVS DVGLKDEYSL ADLPEIMIEP EILNMINDDL DVAANTAAAA  240
NDHRDHQDAE KESENWLAYL EKELDLWGES TATTNADVEG ADPVASYFQA LQELHLHL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.11e-68MYB family protein