PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.1218
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 140aa    MW: 15423.4 Da    PI: 5.3588
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.1218genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.91.1e-171965349
                                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                   ie k     tfskRr+g++KKA+ LSvLC+++vav+ +s+  + y y
  evm.model.AsparagusV1_04.1218 19 IEKKEAGGLTFSKRRQGLFKKASDLSVLCGVDVAVLALSEAENPYCY 65
                                   777777788******************************98876666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    
MDSSLRSGGG RRKIPIVKIE KKEAGGLTFS KRRQGLFKKA SDLSVLCGVD VAVLALSEAE  60
NPYCYAFTPS LIRRILSTSP PAPPSSSSSS SSDNVDELWW EEEPIERMSL DELRVFRGQL  120
AREMQSIEAE EEGFSRSRP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-16M-type_MADS family protein