PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.1219
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 137aa    MW: 15092.1 Da    PI: 5.3588
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.1219genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.76.4e-181966350
                                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                   ie k     tfskRr+g++KKA+ LSvLC+++vav+ +s+  + y y+
  evm.model.AsparagusV1_04.1219 19 IEKKEAGGLTFSKRRQGLFKKASDLSVLCGVDVAVLALSEAENPYCYA 66
                                   777777788*******************************99888776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    
MDSSLRSGGG RRKIPIVKIE KKEAGGLTFS KRRQGLFKKA SDLSVLCGVD VAVLALSEAE  60
NPYCYASTPS LIRRILSTSP PAPSSSSSSD NVDELWWEEE PIERMSLDEL RVFRGQLARE  120
MQSIEAEEEG FSRSRP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-16M-type_MADS family protein