PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.1341

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 162aa MW: 18458.6 Da PI: 10.2599

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.1341	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.9	1.3e-09	52	101	9	48
HHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmg..........kgRtlkqcksrwqkyl 48 d ll + vk++ g++Wk+I +++ k+Rt+ qc +rwqk+l evm.model.AsparagusV1_04.1341 52 DALLTESVKKHNGKNWKSIDKCIIvdelciaklfKNRTDVQCLHRWQKVL 101 6789999****************************************986 PP
2	Myb_DNA-binding	55.1	1.8e-17	107	151	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+WT+eEd+l++ vk++G+++W+ Ia+ ++ gR +kqc++r++ evm.model.AsparagusV1_04.1341 107 KGAWTKEEDDLILSQVKLHGTKNWSVIAKSLP-GRIGKQCRERLFR 151 79****************************.********975 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence
MAKKAAWSIS SCKPGNGVLF LRVDNLDTYW QSDGAQPHLV NIQFQKKVKL QDALLTESVK 60 KHNGKNWKSI DKCIIVDELC IAKLFKNRTD VQCLHRWQKV LDPELVKGAW TKEEDDLILS 120 QVKLHGTKNW SVIAKSLPGR IGKQCRERLF RQLPSVSLHM I*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	5e-35	MYB family protein