PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.1652

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 663aa MW: 73791.7 Da PI: 6.8686

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.1652	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	102	126	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a+ G C yGd+C+F+H+ evm.model.AsparagusV1_04.1652 102 ICPVVAKRGsgdACTYGDKCRFSHD 126 588888888889************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence
MGEEEKIDPK FDELALNTPP KSAVSDHRTP EELVAKAIAP VKAEYLRPPP PSRPRSNDDA 60 VDDDASERKR AAVTPSGVVK EKKSKRQLKR ERRQEQKSAL NICPVVAKRG SGDACTYGDK 120 CRFSHDLDAF LAQKPPDLEG SCPFLDAEKS CPYGITCRFL STHKRTSQKI ESLASSKKTH 180 EINKLNKDFQ RLLWKNKVTF PKADAQLKLL GLRVGNNTKA EPEMCEGASL EDNLNGSHEL 240 HVDDSNETPS GIVDNTKCAS VECTEKDCLE GTLVTNDTRP LKKIKCPSDE PCPSTEISNE 300 ELKAENNVDQ ISADNSSGSS EVDMSLRPHP REKKLIDFSR KLYLAPLTTV GNLPFRRICK 360 MLGADITCGE MAMCTNLLQG QASEWALLRR HSSEDIFGIQ ICGSYPDTIA RTVELVDREC 420 EVDFIDINMG CPIDIVCNKG AGSSLLTKPM RMKSIIQAAS GTTDKPITVK VRTGYFEGRN 480 RIDSLVSDIA QCGASAITIH GRSRQQRYSK LADWDYIYQC VRKSPNTLPV LGNGDIFSFT 540 EWNKHITECP ELSTSMIARG ALIKPWIFTE IKEQRHWDIS SGERFNILKD YVNCGLAHWG 600 SDSKEGLCEL WSCTLGFRFQ GCGDNTIFPV GMAELHVQIH SSWFIGYHPS TTKLETSQLF 660 WS*

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence

MGEEEKIDPK FDELALNTPP KSAVSDHRTP EELVAKAIAP VKAEYLRPPP PSRPRSNDDA  60
VDDDASERKR AAVTPSGVVK EKKSKRQLKR ERRQEQKSAL NICPVVAKRG SGDACTYGDK  120
CRFSHDLDAF LAQKPPDLEG SCPFLDAEKS CPYGITCRFL STHKRTSQKI ESLASSKKTH  180
EINKLNKDFQ RLLWKNKVTF PKADAQLKLL GLRVGNNTKA EPEMCEGASL EDNLNGSHEL  240
HVDDSNETPS GIVDNTKCAS VECTEKDCLE GTLVTNDTRP LKKIKCPSDE PCPSTEISNE  300
ELKAENNVDQ ISADNSSGSS EVDMSLRPHP REKKLIDFSR KLYLAPLTTV GNLPFRRICK  360
MLGADITCGE MAMCTNLLQG QASEWALLRR HSSEDIFGIQ ICGSYPDTIA RTVELVDREC  420
EVDFIDINMG CPIDIVCNKG AGSSLLTKPM RMKSIIQAAS GTTDKPITVK VRTGYFEGRN  480
RIDSLVSDIA QCGASAITIH GRSRQQRYSK LADWDYIYQC VRKSPNTLPV LGNGDIFSFT  540
EWNKHITECP ELSTSMIARG ALIKPWIFTE IKEQRHWDIS SGERFNILKD YVNCGLAHWG  600
SDSKEGLCEL WSCTLGFRFQ GCGDNTIFPV GMAELHVQIH SSWFIGYHPS TTKLETSQLF  660
WS*