PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.1813

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

LBD

Protein Properties

Length: 255aa MW: 27602.2 Da PI: 6.9126

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.1813	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.2	1.3e-38	91	191	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasn +kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++ evm.model.AsparagusV1_04.1813 91 PCGACKFLRRKCVQGCVFAPYFCHEQgAAHFAAIHKVFGASNASKLLSHLPASDRLEAALTISYEAQARLQDPIYGCVSH 170 7***********************89************************************************ PP DUF260 80 ilklqqqleqlkaelallkee 100 i++lqqq+ +l+a+la+lk++ evm.model.AsparagusV1_04.1813 171 IFALQQQVVNLQAQLASLKAQ 191 **************99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MVQVSRGGWS GWSLVAQWCR GGGWWKRTLV SGIVEAAWVD MALVEWRWLS LVERCLGSVD 60 AVSAGVGEQH LGSDALWSMD AVSGGAGFGS PCGACKFLRR KCVQGCVFAP YFCHEQGAAH 120 FAAIHKVFGA SNASKLLSHL PASDRLEAAL TISYEAQARL QDPIYGCVSH IFALQQQVVN 180 LQAQLASLKA QTAQNSQVLL SNPSNSESML CYNNNYVHPN MISNNNYGIG EGSSYAVDME 240 DLQSVAYAYL YRHT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	8e-56	LBD family protein