PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.239
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 243aa    MW: 27986.1 Da    PI: 8.2778
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.239genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.67.1e-191966148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT++Ed+llv+ v+++G g+W++++r  g++R++k+c++rw +yl
  evm.model.AsparagusV1_04.239 19 KGPWTPQEDKLLVEHVNLHGEGRWNSVSRLTGLKRSGKSCRLRWVNYL 66
                                  79********************************************97 PP
2Myb_DNA-binding537.9e-1772116147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rg+ T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  evm.model.AsparagusV1_04.239  72 RGKITPHEETIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 116
                                   8999******************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MESAVQFGWS SRFDDGWRKG PWTPQEDKLL VEHVNLHGEG RWNSVSRLTG LKRSGKSCRL  60
RWVNYLRPDL KRGKITPHEE TIILELHARW GNRWSTIARS LPGRTDNEIK NYWRTHFKKG  120
KPTCRNSDKT RARSRFIRHQ QEQQNQHLQH QDLQPQQPQQ QLQLQHTAAM AQEIQEMAAY  180
MFPAPYNMFQ NIGEHLNVGS TSEEGSPEDG PEMAWGNLWN LDDVNDARDA AGEDIGGFSF  240
GG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.13e-68MYB family protein