PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.2414
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 212aa    MW: 23324 Da    PI: 8.9617
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.2414genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS139.34.1e-43216384238
                           GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg.....sk 155
                                    +++ sP++k++ ++aN aIl+a+   +++Hi+Dfd++qG+Q+++L++++a+R+    +pp ++iT+v +p+         
  evm.model.AsparagusV1_04.2414   2 LYDGSPCFKLGLMAANFAILDATRDYSKIHIVDFDLGQGGQYASLINSIAERSrhrLSPPFVKITAVCDPTFPfntliTV 81 
                                    7899************************************************9666669**********8866889999* PP

                           GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                    ++l+ +g++++++Ae++g++++fnvl   r+++l+ + L ++pgEalaVn+++ l r+ desvs +++rd++L+ vksl+
  evm.model.AsparagusV1_04.2414  82 NNLNIIGDKITRLAERFGITVKFNVL-NWRMTELDRSVLGCEPGEALAVNFAFVLSRIADESVSPANPRDQLLRRVKSLE 160
                                    ************************95.889************************************************** PP

                           GRAS 236 Pkv 238
                                    P v
  evm.model.AsparagusV1_04.2414 161 PSV 163
                                    *87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MLYDGSPCFK LGLMAANFAI LDATRDYSKI HIVDFDLGQG GQYASLINSI AERSRHRLSP  60
PFVKITAVCD PTFPFNTLIT VNNLNIIGDK ITRLAERFGI TVKFNVLNWR MTELDRSVLG  120
CEPGEALAVN FAFVLSRIAD ESVSPANPRD QLLRRVKSLE PSVELGPGVS EPVKLRFGSM  180
KANPGFTCKE EGGRLGFGWM GRVLVMVSAW R*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.14e-41GRAS family protein