PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.2566

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 455aa MW: 49683 Da PI: 8.5917

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.2566	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	47	73	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H+p evm.model.AsparagusV1_04.2566 47 PGEPDCAYYMRTGMCRFGMTCRFNHPP 73 5789*********************97 PP
2	zf-CCCH	39.2	1.2e-12	94	118	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ evm.model.AsparagusV1_04.2566 94 QPECQYYLKTGTCKFGATCKFHHPK 118 799********************96 PP
3	zf-CCCH	37.7	3.4e-12	140	164	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ evm.model.AsparagusV1_04.2566 140 EKECTYYLRTGQCKFGSTCKFHHPQ 164 679********************97 PP
4	zf-CCCH	38.4	2e-12	298	323	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ evm.model.AsparagusV1_04.2566 298 DQPECQFYMKTGDCKFGAVCRFHHPR 323 689*********************96 PP
5	zf-CCCH	38	2.8e-12	343	369	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ evm.model.AsparagusV1_04.2566 343 PGEPLCVFYSRYGICKFGPNCKFDHPM 369 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MEYGSRASAV TEASSSLSPT AIDQETLWQM RLRGNETLET GEYPERPGEP DCAYYMRTGM 60 CRFGMTCRFN HPPNRKLAVA AARMKGGYPE RIGQPECQYY LKTGTCKFGA TCKFHHPKDK 120 AGISGRVQLN VLGYPLRPNE KECTYYLRTG QCKFGSTCKF HHPQPSNAMV SLRGSPIYTS 180 VHSPATPGQQ SYSGGMANWQ RASYIPSPRW QGPSSYAQLI LPQGLVQVPS WNTFSGQLGS 240 ASSPESQQTP SSNQYYGMSH QSETTTVAQG TAAPYRSGSM PVGQYAVQTE NIFPERPDQP 300 ECQFYMKTGD CKFGAVCRFH HPRERFIPAP NCVLSPLGLP LRPGEPLCVF YSRYGICKFG 360 PNCKFDHPMA APMGIFAYSL STSSSPDIPV VRRLLGSSAG PPALTLSSET SVEAVPVSRR 420 ISLSDSRQMA SGDENINTEG SHASQSIGQV SSFS*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MEYGSRASAV TEASSSLSPT AIDQETLWQM RLRGNETLET GEYPERPGEP DCAYYMRTGM  60
CRFGMTCRFN HPPNRKLAVA AARMKGGYPE RIGQPECQYY LKTGTCKFGA TCKFHHPKDK  120
AGISGRVQLN VLGYPLRPNE KECTYYLRTG QCKFGSTCKF HHPQPSNAMV SLRGSPIYTS  180
VHSPATPGQQ SYSGGMANWQ RASYIPSPRW QGPSSYAQLI LPQGLVQVPS WNTFSGQLGS  240
ASSPESQQTP SSNQYYGMSH QSETTTVAQG TAAPYRSGSM PVGQYAVQTE NIFPERPDQP  300
ECQFYMKTGD CKFGAVCRFH HPRERFIPAP NCVLSPLGLP LRPGEPLCVF YSRYGICKFG  360
PNCKFDHPMA APMGIFAYSL STSSSPDIPV VRRLLGSSAG PPALTLSSET SVEAVPVSRR  420
ISLSDSRQMA SGDENINTEG SHASQSIGQV SSFS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-155	C3H family protein