PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.2573

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB_related

Protein Properties

Length: 240aa MW: 26351.5 Da PI: 7.4773

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.2573	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	7.9e-09	59	100	16	47
HHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 16 vkqlGgg...........tWktIartmgkgRtlkqcksrwqky 47 ++q + + W++Ia +++ gRt++++k++w+++ evm.model.AsparagusV1_04.2573 59 HHQTPQPprqqvscsskfLWSLIAGRLP-GRTDNEIKNYWNTH 100 5555555777777777777*******.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MGRSPCCEKA HTNKGAWTKE EDERLISYIX XXXLPPPLDQ LPPSRPQAWQ LHRGGGRAHH 60 QTPQPPRQQV SCSSKFLWSL IAGRLPGRTD NEIKNYWNTH IKRKLLSRGV DPQTHRPVVA 120 NGVASPVTLE ANQSKKIEEE DGHSGASVTS TGTEEERCPD LNLDLSISLP WSADHVKLEE 180 TVAVAEGSSG VVCLCCNLGF GSGDGCSSCK AGSNPPHVIR YYRPLEERGE RIDYSSNFK*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34990.1	7e-45	MYB family protein