PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.2615
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 128aa    MW: 14047.4 Da    PI: 11.6897
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.2615genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.8e-161965349
                                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                   ie k    vtfskRr+g++KKA+ LSvL +++vav+ +s+  + y y
  evm.model.AsparagusV1_04.2615 19 IEKKEAGGVTFSKRRQGLFKKASDLSVLYGVDVAVLALSEAENPYCY 65
                                   88888899*******************************98876666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    
MDSSLRSGGG RRKIPIVKIE KKEAGGVTFS KRRQGLFKKA SDLSVLYGVD VAVLALSEAE  60
NPYCYAFTPS LIRASSPRLR RHLLLLLLRT MWMSCGGRRS RSNLFLFSVF LFRVVTGTSN  120
FGSTPGS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-14M-type_MADS family protein