PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.2757
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 24022.2 Da    PI: 6.5305
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.2757genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.3e-17107156251
                                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                         SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                    +ie k  r vtfskRr+gi+KKA  LSvL +++vav+ +s+ g+ y y+s
  evm.model.AsparagusV1_04.2757 107 KIEKKEARGVTFSKRRQGIFKKAPDLSVLYGVDVAVMALSEAGNPYCYAS 156
                                    5999***************************************9998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MSTSDSDTKP DPSPVPQSII DAFSVATVFD PSLHCVVCTD ALPLVSPARS ASSPGSPASS  60
VAPRSLNFTR GGGGKGGGPE AARAVEPWIP PCAPEEVRGR RKILIVKIEK KEARGVTFSK  120
RRQGIFKKAP DLSVLYGVDV AVMALSEAGN PYCYASTPSL IRRILSTSPP APSSSSSNNV  180
DELWWEEEPI EHMSLDELRV FRGQLAREMQ SIEAEEGGFS RSRP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28460.13e-15M-type_MADS family protein