PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.2918
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 506aa    MW: 56471.2 Da    PI: 4.4258
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.2918genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3628.5e-1111985032309
                           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                    ++lL++cA  +s+g++e+a+ ++a+l++++s +gdp qRlaay++e+Laar+a+s+++ly+al+++e +   +s++l+a+
  evm.model.AsparagusV1_04.2918 198 KQLLFDCAATISEGNMEEASGIIAELRQIVSIQGDPPQRLAAYLVEGLAARMASSGQGLYNALKCKEPP---TSDRLSAM 274
                                    589*****************************************************************9...9******* PP

                           GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeele 159
                                    ++++ev+P++kf++++aN+aI ea++ ee+vHiiDfdi+qG Q+ +L+q L+ R+++p +lRiTgv++pes+  +   l+
  evm.model.AsparagusV1_04.2918 275 QILFEVCPCFKFGFMAANSAITEAIKDEEKVHIIDFDINQGSQYFNLIQDLSRRKNKPVRLRITGVDDPESVqrKIGGLK 354
                                    **********************************************************************99878889** PP

                           GRAS 160 etgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                                     +g+rLak+Ae lgvpf+f++ +a ++ d+++++L++ +gEal+Vn+++qlh+++desvs+ ++rd +L++vksl+Pk+v
  evm.model.AsparagusV1_04.2918 355 VIGQRLAKLAEDLGVPFDFRA-IAAKTGDVTPSMLDCGRGEALVVNFAFQLHHMPDESVSTVNQRDCLLRMVKSLEPKLV 433
                                    *********************.6999****************************************************** PP

                           GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309
                                    +vveq++++n+++F+ rf+e  +yysa+f+sl+a+++re+ +r++vE+++l+r+ivn+vacega+r+e +
  evm.model.AsparagusV1_04.2918 434 TVVEQDVNTNTAPFFPRFVEVYNYYSAVFESLDATMSREDPDRMNVEKQCLARDIVNIVACEGADRIESR 503
                                    ******************************************************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    
MSFPSATSYG ESSMYRGKVN ADNSRLSAPL FNPDKQMFNY TPDSYRQELY TQQYTPNSSV  60
PGSIYNPQVS SGPYQLIRNI RSSIISESPY NSCFAAIREN DSPLVSNISH QTTQSLSDDP  120
ISPANEMEYD EDDIRLKLQE LEQTLLDDND EEDQEMGMDE DWTEPIRDLL LSHSPKESSS  180
DSNLSSISSN NRETRTPKQL LFDCAATISE GNMEEASGII AELRQIVSIQ GDPPQRLAAY  240
LVEGLAARMA SSGQGLYNAL KCKEPPTSDR LSAMQILFEV CPCFKFGFMA ANSAITEAIK  300
DEEKVHIIDF DINQGSQYFN LIQDLSRRKN KPVRLRITGV DDPESVQRKI GGLKVIGQRL  360
AKLAEDLGVP FDFRAIAAKT GDVTPSMLDC GRGEALVVNF AFQLHHMPDE SVSTVNQRDC  420
LLRMVKSLEP KLVTVVEQDV NTNTAPFFPR FVEVYNYYSA VFESLDATMS REDPDRMNVE  480
KQCLARDIVN IVACEGADRI ESRKS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.11e-167GRAS family protein