PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.3217
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB_related
Protein Properties Length: 243aa    MW: 26491.6 Da    PI: 9.9229
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.3217genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-1480124347
                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    +WT+eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
  evm.model.AsparagusV1_04.3217  80 PWTEEEHRTFLAGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 124
                                    8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MEKEKGVKLF GVRIEASPAA VEAEEEVMRK SYSTGNLASC TAAVRSSDHV AGDHGYLSDG  60
GLVLENSRSK ARQERKRGVP WTEEEHRTFL AGLEKLGKGD WRGISRNFVT TRTPTQVASH  120
AQKYFLRKSN PNKKKRRSSL FDVGINDNDI PKKVHLFGDG TNCQSKDNHL VNSPSPIATP  180
ALLPRVTEHV GANSRDQASS NFGQDFLQLS SANSPSVDNS DLELRISPPN QSNLLAGAIR  240
VI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133137KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-37MYB_related family protein