PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.3297
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 295aa    MW: 33768.8 Da    PI: 4.8828
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.3297genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-14348146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                   +g+W +eEde+l+d+vk++G+++W++I ++  + Rt+k+c++rw +
  evm.model.AsparagusV1_04.3297  3 KGPWMAEEDEILLDYVKKHGPRDWSSIRSKGLLPRTGKSCRLRWVN 48
                                   79*************************8876677**********87 PP
2Myb_DNA-binding44.92.7e-145999345
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                   ++++eE+ + +++ +++G++ W++Ia +++ gRt++++k++w 
  evm.model.AsparagusV1_04.3297 59 KFSPEEERIVIELQARFGNK-WARIATYLP-GRTDNDVKNFWS 99
                                   79******************.*********.***********5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MRKGPWMAEE DEILLDYVKK HGPRDWSSIR SKGLLPRTGK SCRLRWVNKL KPDLKTGCKF  60
SPEEERIVIE LQARFGNKWA RIATYLPGRT DNDVKNFWST RQKRLARSLQ KPLPSKSNKN  120
QGEIPSLTDE SPTFEVSLLD LYSFEEESQS IQDSQTSYTD NQDAATMIQT RSLPPNQDLT  180
SPHNLTPPLI EPLEWKPPTQ LDFEHFSDSA LDFPLLFDTP ELIPGHGSTS FQQKFAWQDK  240
DSSFMQLPES LPPFDKNNIK IERDLGTQYS FDDFPVDMFD YADQPGPPTS PAAW*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-64MYB family protein