PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.3383
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family SRS
Protein Properties Length: 230aa    MW: 23483.7 Da    PI: 12.1603
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.3383genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70274.33.7e-237618846153
                         DUF702  46 aakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss....lPeevsseavfrcvrvs 121
                                    aa rr r ++ ++a+  aa++aa+aa  r+++   +++   + ++l+sa +++   +      + +evs +avfrcvrvs
  evm.model.AsparagusV1_04.3383  76 AATRRRR-TAPTSAAGPAARAAASAALPREEHVGPAAKRRRAPAQLPSAPPRRLRRAVAtpagFRREVSLPAVFRCVRVS 154
                                    3444444.444555555666666677777777777777777778888887776665555577799*************** PP

                         DUF702 122 svdd.geeelaYqtavsig.GhvfkGiLydqGle 153
                                     vd+ ++eelaYqt+vsig Gh+fkGiLyd+G+e
  evm.model.AsparagusV1_04.3383 155 QVDEgDQEELAYQTSVSIGgGHLFKGILYDHGPE 188
                                    ****44566*********737***********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MAGLSLGGAA GGGGGEPAGD PAGDPLQPIA APPQFNPATM IAFSSADPTT SPAAPAPAAA  60
GPAVLLLLLR RPARTAATRR RRTAPTSAAG PAARAAASAA LPREEHVGPA AKRRRAPAQL  120
PSAPPRRLRR AVATPAGFRR EVSLPAVFRC VRVSQVDEGD QEELAYQTSV SIGGGHLFKG  180
ILYDHGPEPA SPRRSSSAAG RRPAAQRLRL HTPLAGLCRA AGPRWRTEP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19790.17e-14SRS family protein