PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.3421
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB_related
Protein Properties Length: 155aa    MW: 17833 Da    PI: 9.9246
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.3421genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.64.9e-171055148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   rg+  +eE++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l
  evm.model.AsparagusV1_04.3421 10 RGNIEPEEEDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNHWNSHL 55
                                   677889****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MNYLRPDIKR GNIEPEEEDL IVRLHSLLGN RWSLIAGRLP GRTDNEIKNH WNSHLSKKQG  60
IKVRQGSTKP LSRRTKKKKE SMKTDIFVPK PVRVTSATRN NSSVFEGGDT SQLGNDIHQN  120
YDMSRDLQNE LLDRVYQEYS QLLNSHEDFN ESLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379RRTKKKK
27380RRTKKKKE
37480RTKKKKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.12e-33MYB family protein