PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.3500

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

HB-other

Protein Properties

Length: 360aa MW: 40075.1 Da PI: 6.7695

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.3500	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.9	8.1e-09	13	75	6	56
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 +ft++++ e+e++ ++ n ps+e + LA+k ++ +qV +WFqNrR+ ++ evm.model.AsparagusV1_04.3500 13 RFTQNEVVEMEACLQEvhNTVPSREVICSLAEKFsaspdrfgkfVVQPKQVWNWFQNRRYAQR 75 69***********877999************************************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MGRPPSTGGP AFRFTQNEVV EMEACLQEVH NTVPSREVIC SLAEKFSASP DRFGKFVVQP 60 KQVWNWFQNR RYAQRAKLGK APGKLSVSPM PREDSAAFRN VAPPISAPPG RNPSDNAQVE 120 FEAKSARDGA WYDVAVFLSH RMFETGDPEV LVRFSGFGVE EDEWVNVRKC VRQRSLPCEN 180 AECVAVLPGD LILCFQEGKE QALYFDAHVL DAQRRRHDVR GCRCRFLVRY DHDQSEEIVP 240 LRKVCRRPET DYRLQALQTS RLSASLDPKA PSPNDPSPAS SNDFNMASQK TRKHRKLMDI 300 NADEMNSVSP QPPKEPTTMQ TSTPVDVVET KATSDVPMED ATAVTIVSTD QPQGTGPGV*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MGRPPSTGGP AFRFTQNEVV EMEACLQEVH NTVPSREVIC SLAEKFSASP DRFGKFVVQP  60
KQVWNWFQNR RYAQRAKLGK APGKLSVSPM PREDSAAFRN VAPPISAPPG RNPSDNAQVE  120
FEAKSARDGA WYDVAVFLSH RMFETGDPEV LVRFSGFGVE EDEWVNVRKC VRQRSLPCEN  180
AECVAVLPGD LILCFQEGKE QALYFDAHVL DAQRRRHDVR GCRCRFLVRY DHDQSEEIVP  240
LRKVCRRPET DYRLQALQTS RLSASLDPKA PSPNDPSPAS SNDFNMASQK TRKHRKLMDI  300
NADEMNSVSP QPPKEPTTMQ TSTPVDVVET KATSDVPMED ATAVTIVSTD QPQGTGPGV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.1	1e-120	HB-other family protein