PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.3526
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 139aa    MW: 15671.2 Da    PI: 9.9437
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.3526genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS103.62.8e-322137227374
                           GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                                    +L+lvk+l+Pkvvv ++q  +         f++ ++  ++l+ds++a+ ++ ++  +k+Er+l++++i+n+v ++ +   
  evm.model.AsparagusV1_04.3526   2 ILRLVKQLNPKVVVSADQGYNQ-------NFIHLFHPLVVLLDSIDAS-GSGADIVNKIERFLIQPRIENAVLAQYRT-- 71 
                                    79***************99887.......699***************9.8999999********************99.. PP

                           GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                        + + Wre + ++GF + ++s+++++qa++ll++v+++g++ve+++gs++l+W++ +L svSaW+
  evm.model.AsparagusV1_04.3526  72 --AAKIAPWREIFASVGFVQGQFSNFTETQAECLLKRVQVRGFQVEKRQGSMFLYWQRGELGSVSAWK 137
                                    ..8999*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MILRLVKQLN PKVVVSADQG YNQNFIHLFH PLVVLLDSID ASGSGADIVN KIERFLIQPR  60
IENAVLAQYR TAAKIAPWRE IFASVGFVQG QFSNFTETQA ECLLKRVQVR GFQVEKRQGS  120
MFLYWQRGEL GSVSAWKC*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-38GRAS family protein