PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.3554
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family YABBY
Protein Properties Length: 222aa    MW: 24374.7 Da    PI: 7.598
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.3554genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY232.97.8e-72201836170
                          YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 
                                     seq+Cyv+C++C+t+lavsvP +slfk+vtvrCGhCt+llsvn++      a + hl++++  + +++l +e       
  evm.model.AsparagusV1_04.3554  20 PSEQLCYVHCTYCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHAFLAPTHHNLLDEIACPPPS 99 
                                    68******************************************9999999999999*******9999998877766666 PP

                          YABBY  86 vekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
                                       + ++++++s++   +  +ee p+ p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+
  evm.model.AsparagusV1_04.3554 100 LLVDPANMHNNSMNP-VKGAEEERPQNPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPH 178
                                    666666666666666.5677888999999*************************************************** PP

                          YABBY 166 ihfgl 170
                                    ihfgl
  evm.model.AsparagusV1_04.3554 179 IHFGL 183
                                    ***97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MSSSSAAASF SQLDHFSPPP SEQLCYVHCT YCDTVLAVSV PCSSLFKTVT VRCGHCTNLL  60
SVNMRGLLLP AANQLHLGHA FLAPTHHNLL DEIACPPPSL LVDPANMHNN SMNPVKGAEE  120
ERPQNPVANR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI THREAFSAAA KNWAHFPHIH  180
FGLMPDQSLK KNNVRQQEGD DVLLKDGFYT AAANMQGVTP Y*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.16e-84YABBY family protein