PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.370
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C2H2
Protein Properties Length: 382aa    MW: 42077.1 Da    PI: 8.9264
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.370genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.7e-06157179223
                                   EETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                   +CpdCg+ F   ++L+ H+++ H
  evm.model.AsparagusV1_04.370 157 TCPDCGEIFVKAESLELHQSVrH 179
                                   8******************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MADTKKTPKT HQKCHPEPEN SPSRRALKSF FSCKYHRDAE EKKNKKCKKL RCNGSLCHLK  60
DTSSALNQKP RASLREINGD NSTDGVAVPK SKAYLSSNSS STLATVASAS SSVSSSVGGS  120
FRVMHLRRLS GCYECHMVVD PINGFLRESS LRSTVCTCPD CGEIFVKAES LELHQSVRHA  180
VSELGPEDTS RNIVEIIFQS SWLKKQTPVC KIDRILKIHN TKKTISSFEA YRDSIKNNAS  240
EISAKKHPRC IADGNELLRF HCTTFRCSLG LDGSSNLCDS IPSCKACGII RHGVKTDDCG  300
RIQTLATSGR AHDSVKVLME GEKRAMLVCR VIAGRVKKNQ ESTEEFDSVA GVSGVYSNLD  360
ELFVFDPKAI LPCFVVIYRD F*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-97C2H2 family protein