PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.403

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 315aa MW: 35644.8 Da PI: 4.7489

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.403	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.2	3.9e-13	22	67	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W eEde l+++v+++G+++W++I ++ + Rt+k+c++rw + evm.model.AsparagusV1_04.403 22 KGPWMSEEDEVLLEYVQRHGPRDWSSIRSKGLLPRTGKSCRLRWVN 67 79***********************8876677********87 PP
2	Myb_DNA-binding	46.2	1.1e-14	78	118	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+eE+ + +++ +++G++ W++Ia +++ gRt++++k++w evm.model.AsparagusV1_04.403 78 KFTPEEERIVIELQARFGNK-WARIATYLP-GRTDNDVKNFWS 118 79****************.*****.*********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence
MQGAAKVSSK RVNDRCGATT RKGPWMSEED EVLLEYVQRH GPRDWSSIRS KGLLPRTGKS 60 CRLRWVNKLQ PNLKTGCKFT PEEERIVIEL QARFGNKWAR IATYLPGRTD NDVKNFWSTR 120 QKRLARMLQI PLPSKPSKNQ SKMPLTNDPP TFEVASLDLI PFEEESVESN QISYVDDDNR 180 EQRSSHQMPD DYMPNPTMPL LEPQLNWEPP QLQLENLPNP ELDFPLLLES SDHLIQQFEG 240 TGLGGNSSFL QIITENSPFL GLGDGTSGVK IEGHSAGGAP DSFFDDFPVD MLDFMEQXXI 300 GRVWLLPDIL LELN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	7e-63	MYB family protein