PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.532
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family Trihelix
Protein Properties Length: 257aa    MW: 28775.8 Da    PI: 8.4898
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.532genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix25.92.5e-08771164185
                      trihelix  41 rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                                   r+  rs++qC++kw+nl +++kk++++e++  +++s     + ++
  evm.model.AsparagusV1_04.532  77 RPRCRSQNQCNDKWDNLLRDFKKVTHHESEPDKPKS-----YWEM 116
                                   55569************************9655444.....4444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MSNPPISTQT PPSSSSSPSP LNPDYRKGNG LLQENPNPNH RKRLDDARRS EPNGPTIIAA  60
TGRSPSSGEV DRELLLRPRC RSQNQCNDKW DNLLRDFKKV THHESEPDKP KSYWEMERVE  120
RKEKGLPSNF GVEVFEALRD VVGRRKESPD TSETSDSGQA ADTAEPDPKR QKVRDTGSSL  180
IEGASMIART LLSCEEKQEK RHRDLIQLHE RRLRLESDRI ELNRQGFAGL ISAVSSLSSA  240
IHAVSRRDYQ NNGDAS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-16Trihelix family protein