PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.590

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 1146aa MW: 127714 Da PI: 8.451

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.590	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	1031	1053	1	21
EEET..TTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHir 21 y+C+ C++sFs+k++L H + evm.model.AsparagusV1_04.590 1031 YTCNieGCTMSFSTKHDLALHKK 1053 99*******************87 PP
2	zf-C2H2	12.8	0.00036	1056	1078	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H ++H evm.model.AsparagusV1_04.590 1056 CPeeGCGKKFFSHKYLVQHKKVH 1078 9999*****************99 PP
3	zf-C2H2	11.6	0.00084	1114	1138	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y C++C+++F+ s++ rH r+ H evm.model.AsparagusV1_04.590 1114 YICSKCSQTFRFVSDFSRHKRKtgH 1138 89******************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1146 aa Download sequence
MKKFNKKTPF SPLEVEALFW RACADKPFSV EYANDMPGSG FVPIVKKWGC KEEEVGNVGE 60 SGWNMRGVSR AKGSLLRFMK EEIPGVTSPM IYVAMMFSWF AWHVEDHELH SLNYLHLGSG 120 KTWYGVPRDA AIAFEDVVRV HGYGGEVNPL VTFTILGEKT TVMSPEVLLG AGIPCCRLVQ 180 NPGEFVVTFP GAYHSGFNHG FNCAEAANIA TPGWLRVAKE AAVRRASINY PPMVSHFQLL 240 YALALSLCSR VPLIGVSEPR SSRLKDKMRG EGEVMVKEIF VQNVIETNDL LSALLNKGSS 300 CIVLPHNMHD SPLCSNSLLR SQLKMKPRLS LGLCSREEAL EASRVFPAND VILGRNAGIE 360 HSKASATSEK SGISAHNSSG SDSQHGENEN ESAVHSDGLL DHGLLSCVTC GILSFTCVAV 420 VRPKQAAARY LMSADCGFLN EQNIVSGENS NRDDKIHWRR STSDLLCDSE QLERHAQYRS 480 PSPVHVSDHN FEDNGSDAAC RGASALALLA SAYGDSSDLD EDGSPATSPR ADEDNDSSHV 540 TRCANINLPE SDCQNDSDNE YDEMNGSTPE FSSGDHPGML DNLEDNGEME TSSSSIKSIG 600 ETRSVDYEGP ENKYCTTGTA KICQSNVKME RIASGSVSTV MKPNSTRTSP SRNNDAIRQC 660 SVVSAIERSD KDSSRMHVFC LEHALEVEKL LHPLGGVNIM ILCHPDYPKI ETEAKLLAEE 720 LETDYEWKSI DFRGPTQKDL ESIRAAMEDE ESMPTSSDWA VKLGINLFYS ANLSKSPLYS 780 KQLPYNAVIY RAFGCKSPNN SPLTSKSSKR RPGRQRKIVV AGKWCGKVWM RNQVHPLLSD 840 RKDDQEQKHE RFYSKSNSEI KSEEVETEIK NEKIVSRKSS RSRKRKKRPL SRASAKKQKC 900 VTPQVMDKKA KVSDTSAAQT SSTKHSRVLR SCRKSDVKYE SEEEPTTVRS SRRLKAKSET 960 KTKPTITRST SKLHIEQETE EAPNTRLRTK PSKSKDTSAN PPINKQSRKK KPKTTPNPIK 1020 EEEEEEAAKD YTCNIEGCTM SFSTKHDLAL HKKDICPEEG CGKKFFSHKY LVQHKKVHLD 1080 DRPLACPWKG CKMRFKWAWA RTEHIRVHTG DRPYICSKCS QTFRFVSDFS RHKRKTGHLA 1140 KKGRR*

Sequence ? help Back to Top

Protein Sequence Length: 1146 aa Download sequence

MKKFNKKTPF SPLEVEALFW RACADKPFSV EYANDMPGSG FVPIVKKWGC KEEEVGNVGE  60
SGWNMRGVSR AKGSLLRFMK EEIPGVTSPM IYVAMMFSWF AWHVEDHELH SLNYLHLGSG  120
KTWYGVPRDA AIAFEDVVRV HGYGGEVNPL VTFTILGEKT TVMSPEVLLG AGIPCCRLVQ  180
NPGEFVVTFP GAYHSGFNHG FNCAEAANIA TPGWLRVAKE AAVRRASINY PPMVSHFQLL  240
YALALSLCSR VPLIGVSEPR SSRLKDKMRG EGEVMVKEIF VQNVIETNDL LSALLNKGSS  300
CIVLPHNMHD SPLCSNSLLR SQLKMKPRLS LGLCSREEAL EASRVFPAND VILGRNAGIE  360
HSKASATSEK SGISAHNSSG SDSQHGENEN ESAVHSDGLL DHGLLSCVTC GILSFTCVAV  420
VRPKQAAARY LMSADCGFLN EQNIVSGENS NRDDKIHWRR STSDLLCDSE QLERHAQYRS  480
PSPVHVSDHN FEDNGSDAAC RGASALALLA SAYGDSSDLD EDGSPATSPR ADEDNDSSHV  540
TRCANINLPE SDCQNDSDNE YDEMNGSTPE FSSGDHPGML DNLEDNGEME TSSSSIKSIG  600
ETRSVDYEGP ENKYCTTGTA KICQSNVKME RIASGSVSTV MKPNSTRTSP SRNNDAIRQC  660
SVVSAIERSD KDSSRMHVFC LEHALEVEKL LHPLGGVNIM ILCHPDYPKI ETEAKLLAEE  720
LETDYEWKSI DFRGPTQKDL ESIRAAMEDE ESMPTSSDWA VKLGINLFYS ANLSKSPLYS  780
KQLPYNAVIY RAFGCKSPNN SPLTSKSSKR RPGRQRKIVV AGKWCGKVWM RNQVHPLLSD  840
RKDDQEQKHE RFYSKSNSEI KSEEVETEIK NEKIVSRKSS RSRKRKKRPL SRASAKKQKC  900
VTPQVMDKKA KVSDTSAAQT SSTKHSRVLR SCRKSDVKYE SEEEPTTVRS SRRLKAKSET  960
KTKPTITRST SKLHIEQETE EAPNTRLRTK PSKSKDTSAN PPINKQSRKK KPKTTPNPIK  1020
EEEEEEAAKD YTCNIEGCTM SFSTKHDLAL HKKDICPEEG CGKKFFSHKY LVQHKKVHLD  1080
DRPLACPWKG CKMRFKWAWA RTEHIRVHTG DRPYICSKCS QTFRFVSDFS RHKRKTGHLA  1140
KKGRR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	883	887	RKRKK
2	883	911	RKRKKRPLSRASAKKQKCVTPQVMDKKAK
3	884	912	RKRKKRPLSRASAKKQKCVTPQVMDKKAK
4	885	913	RKRKKRPLSRASAKKQKCVTPQVMDKKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-170	C2H2 family protein