PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.591
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 174aa    MW: 19099.5 Da    PI: 4.7621
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.591genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171.1e-05127151226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                    ++ C f+ ++G C+ G+ C + H+
  evm.model.AsparagusV1_04.591 127 ERPVCFFYDAYGLCQKGPACLYDHP 151
                                   6899********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MENTEDTIAS NGSEPAESSS KAIESNAGEI VEWLGVFSGM VLDYCLCLLR IWRDSLSLLK  60
PAAANASSPS IQNAGNTQAP SMISTNHTSN YGQAFSEEVL EQLLRDPQIV DMITVPKTPT  120
GLPLRPERPV CFFYDAYGLC QKGPACLYDH PYPYNPSQHR VVATREGQIN RRY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.11e-09C3H family protein