PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.651

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 278aa MW: 32126.8 Da PI: 7.7726

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.651	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.7e-06	136	155	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r n++ H+ evm.model.AsparagusV1_04.651 136 FACHVCNKTFNRYNNMQMHM 155 78*****************9 PP
2	zf-C2H2	14	0.00015	220	242	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k+F + + ++H +++ evm.model.AsparagusV1_04.651 220 FKCRKCSKPFAVRGDWRTHEKNC 242 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MGLRNLSMDY DYDLGLCFQY PPSLFEWLNS QSRSIPSSQK QEDEMQCLPL INMLEEPKKP 60 NIKEEVKEEV NQEKVTVSLK LGLPGDSESF DGEKTVDNIA CYKEEEEVEE EVEEINEEVK 120 YWIPTPTQIL IGPVQFACHV CNKTFNRYNN MQMHMWGHGS EYRKGPDSLK GTQPMAILKL 180 PCYCCALGCK NNIGHPRAKP LKDFRTLQTH YKRKHGVKPF KCRKCSKPFA VRGDWRTHEK 240 NCGKLWFCSC GSEFKHKRSL NDHVRSFGKD HSPCLMH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20880.1	4e-96	C2H2 family protein