PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.1026
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 300aa    MW: 33213.8 Da    PI: 5.3753
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.1026genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS33.74.9e-11143203261
                           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvsely 61 
                                    +++LlecA a+s ++l  a+++L +l +lasp+  +  +R++ayft A+ +r+++s  ++y
  evm.model.AsparagusV1_05.1026 143 ITTLLECAVAISIDNLPDANRMLLELTQLASPYSpSCAERVIAYFTHAMLSRVMSSRLSIY 203
                                    689*******************************8999****************9877776 PP
2GRAS61.91.3e-19206283227305
                           GRAS 227 vLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305
                                    +++l+  l+P+ +++veqe+ + ++sFl+rf+ +l+yys+lfdsl a+lp ++  r  vE+ ll+rei n++a + ++r
  evm.model.AsparagusV1_05.1026 206 TMRLIEALRPNAITLVEQEMIR-TGSFLDRFVGSLHYYSTLFDSLGASLPVDNPSRYRVENGLLAREIGNILAIRRNSR 283
                                    6899***************988.899***********************************************998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MMKSDYEVRN GALGLIQPND IPWDCGPMGL QIPQDSLARA VGPVVLGGNC TGSDFSEFMD  60
LVAQHISNMS PDSTIDEFSV DNSTISTDKT FPPPFAQTEY YRPHKAPRRD RMSDISTRLV  120
PEHAKVATTK PANEHEEQAL SMITTLLECA VAISIDNLPD ANRMLLELTQ LASPYSPSCA  180
ERVIAYFTHA MLSRVMSSRL SIYWATMRLI EALRPNAITL VEQEMIRTGS FLDRFVGSLH  240
YYSTLFDSLG ASLPVDNPSR YRVENGLLAR EIGNILAIRR NSRVGGWNWA EGPRSLSCP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.19e-19GRAS family protein