PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.1061
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 290aa    MW: 33110.5 Da    PI: 5.6501
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.1061genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.84.3e-11219251335
                                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
                         SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaev 35 
                                    i +++++++t+ kR+  + KKA+ELS+LC++ v
  evm.model.AsparagusV1_05.1061 219 ITDERQQKITYQKRKVALKKKAYELSTLCNIPV 251
                                    7789999***********************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MSSGKTELRI FKLLVMYVND HVVAEKFVDI LLPIFKKKAL NSDECLDGLH IIRHILPVLS  60
DKTTGKILSA VNPLLLSCGL NMRLCICDIL DDLSLIDPSF AFLARLLREL NDVSHLELNE  120
LDYDTRISAY NSIMPDIFSS FMEEHALTDI GDAMSKDISI QKEWIDLFRY MVYHLRQILA  180
LNSFRSLCSE DPEVDFFSNI VHLQVEMGRY KLKVQLILIT DERQQKITYQ KRKVALKKKA  240
YELSTLCNIP VRALFSDPDT GEVNSRPENS QEAIDIMTRY LSSGNTVIT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.23e-07MIKC_MADS family protein