PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.1068
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family SBP
Protein Properties Length: 194aa    MW: 20552.6 Da    PI: 8.8679
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.1068genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP72.66.9e-2385133149
                                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
                            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                                    +CqvegC +dl+ ak y+ rhkvC +hsk+p+v+v+g+eqrfCqqCsr 
  evm.model.AsparagusV1_05.1068  85 RCQVEGCLVDLTGAKAYYCRHKVCGMHSKSPKVVVAGIEQRFCQQCSRL 133
                                    6**********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MEMGSGSSGA SDSLNGLKFG KKIYFEDVGN GGNTSGSSSK GLNVSMAAPA PAHPPPPPPP  60
SQKKGKGVSS AGQQQSNQQQ QQPPRCQVEG CLVDLTGAKA YYCRHKVCGM HSKSPKVVVA  120
GIEQRFCQQC SRLGSSPLPT IIIIIIMFLG GFPNLFSFHF HFISDYLVLD YGLGLFGDGF  180
ASLFLSWVKL YCG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-24SBP family protein