PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.1347
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB_related
Protein Properties Length: 160aa    MW: 18587.5 Da    PI: 8.2162
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.1347genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.7e-173376146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                   rg+ T+eE++l+ +++ ++G++ W++Iar ++ gRt++++k++w++
  evm.model.AsparagusV1_05.1347 33 RGNITPEEQLLIMELHSRWGNR-WSKIARQLP-GRTDNEIKNYWRT 76
                                   7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MARVFGIHLR NQQRTGKSCR LRWLNYLRPD VRRGNITPEE QLLIMELHSR WGNRWSKIAR  60
QLPGRTDNEI KNYWRTRIQK KAKQGDSFEY QNQTMTDDAS TSHSNGMEEC SSSQLNYQMQ  120
PNMDNSDAFG APSYNTDSSE SFWNIDEFWS MNPLNGAGD*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-49MYB family protein