PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.1556
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 236aa    MW: 25636.2 Da    PI: 8.7376
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.1556genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS189.42.4e-58222084296
                           GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg.....sk 155
                                    ++++sPi+k++h++aN aIl+a+  + ++Hi+Dfd+sqG+Q+++L++a ++R+   + +  + iT+v +p+         
  evm.model.AsparagusV1_05.1556   2 LYDASPIFKLGHVAANFAILDAARDHPKIHIVDFDLSQGVQYASLINAVSERSrhrSLTLLVNITAVCDPTMPyntpsTV 81 
                                    899************************************************99543335589*******98778889899 PP

                           GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                    ++l+ +g+++  +A+++gvp++f+v + +r ++le  +L ++ gE+laV l+++l r+ des+s +++rd++L+ vksl 
  evm.model.AsparagusV1_05.1556  82 NNLKIIGDKIVTLASRFGVPVRFSV-LNRRASELERASLGCEAGECLAVYLSFALSRIADESASPANPRDQLLRRVKSLG 160
                                    9***********************9.599*************************************************** PP

                           GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                                    P++v +veqe++ n+++F++rf ea+ +y +++dsl+a+++r+++ r  +Er+ lgr+++n
  evm.model.AsparagusV1_05.1556 161 PDIVKLVEQEMNANTAPFATRFGEACGHYGSVLDSLDATMSRDDRGRFRIERA-LGRKASN 220
                                    ****************************************************9.9999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MLYDASPIFK LGHVAANFAI LDAARDHPKI HIVDFDLSQG VQYASLINAV SERSRHRSLT  60
LLVNITAVCD PTMPYNTPST VNNLKIIGDK IVTLASRFGV PVRFSVLNRR ASELERASLG  120
CEAGECLAVY LSFALSRIAD ESASPANPRD QLLRRVKSLG PDIVKLVEQE MNANTAPFAT  180
RFGEACGHYG SVLDSLDATM SRDDRGRFRI ERALGRKASN SEKGHTFVLK ASCSG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.12e-53GRAS family protein