PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.2270

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

CO-like

Protein Properties

Length: 243aa MW: 27158.4 Da PI: 4.8959

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.2270	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.8	5.1e-09	3	45	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ + + +++ +Ce + lC C e H H +v evm.model.AsparagusV1_05.2270 3 RDCDSCRSAPASVYCEADAASLCSACDAEVHAAnfishrHHRV 45 78****************************9557788555555 PP
2	CCT	68	2.5e-23	172	215	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k RkFeK+irY+sRKa+Ae RpR+KGrF+k++ evm.model.AsparagusV1_05.2270 172 REARVLRYREKKKMRKFEKTIRYASRKAYAEARPRIKGRFAKRS 215 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MMRDCDSCRS APASVYCEAD AASLCSACDA EVHAANFISH RHHRVPVVGM EEYNEGEQSN 60 YAALFGEEVD EYLDLVEFGS CEEKKSGLSF ECVKSEVSEG VVPVQSLVVN EEMKEDYDES 120 AMRHGVPLSS VETNSVVPDS TSNPHIRPSK GTIELFSGPP IQVPTQFSTV DREARVLRYR 180 EKKKMRKFEK TIRYASRKAY AEARPRIKGR FAKRSDVELE VDQMFSNYVV VSEEGYGIVP 240 SF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	186	REKKKMR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-48	CO-like family protein