PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.2397
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family bHLH
Protein Properties Length: 207aa    MW: 23626.9 Da    PI: 10.6902
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.2397genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.2e-13132177655
                                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  evm.model.AsparagusV1_05.2397 132 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 177
                                    689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MSLKMFCRCF FGRIWGHEGD RRWIQKWERR VFRRHPPSTS PSRHPLASPW EESALLPDNS  60
NFSSPPPGLK RHREGPTETQ NGGEVRNGGL SHQFSFPKTS SEVAAMEKFL QFQDSVPCKI  120
RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV DYIKELQKQV  180
KAISENRANC TCSSSSKQKP YTSPAV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-56bHLH family protein