PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.2409
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family bHLH
Protein Properties Length: 240aa    MW: 26910.4 Da    PI: 4.773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.2409genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-135196555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                   +  +Er+RR+++N+++  Lr+++P+      +K++Ka+i + A++Y+++Lq
  evm.model.AsparagusV1_05.2409 51 NIVMERNRRRKLNDKLYALRSVVPNI-----TKMDKASIIKDAIDYVQELQ 96
                                   5679*********************7.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MDEMEAEYNN YWETKRFYEE LDSWGIDEAL SYYDSSSPDG TASSSSPAAK NIVMERNRRR  60
KLNDKLYALR SVVPNITKMD KASIIKDAID YVQELQEEER RLMTEVTELE SAKKEKSNVS  120
DITQADYLVV GERRKKRISR TSLLAPGSPG TPWLEVMELS VSEVGERTLV VSITCNKKNG  180
TLIKMCDLFE SLNLNTISAN ITSVSGSLLH TLLVEADNVD CIQLKEKIAT AIAGYHDKP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-64bHLH family protein