PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.2594

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

AP2

Protein Properties

Length: 209aa MW: 23705.2 Da PI: 10.3072

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.2594	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.3	2.9e-16	42	102	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g+ evm.model.AsparagusV1_05.2594 42 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWGH 102 57*****************999955656446***********************997 PP
2	AP2	34.6	4.9e-11	144	187	1	47
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47 s+y+GV +++ +grW+A+I + g +k+ +lg++ t + + a++ evm.model.AsparagusV1_05.2594 144 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQKAGRHAYD 187 89**99******99966...3.6********555566665 PP

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence
MAKSKGTNNE NSNGDNTVNN NGAKVKRKRK SVPRESPSQR SSIYRGVTRH RWTGRYEAHL 60 WDKNCWNESQ NKKGRQVYLG AYDDEEAAAH AYDLAALKYW GHDTILNFPL STYQEELKEM 120 EGQSKEEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYATQK 180 AGRHAYDHGG NRITAASMQS QTSILADT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	3e-87	AP2 family protein