PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.2823

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 502aa MW: 53524.2 Da PI: 7.9547

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.2823	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.2e-11	137	161	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+G+ CkF H+ evm.model.AsparagusV1_05.2823 137 GEKDCAHYMQTRTCKFGEACKFDHP 161 7889********************8 PP
2	zf-CCCH	29.8	1e-09	188	214	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++t Ck+G rCkF+H++ evm.model.AsparagusV1_05.2823 188 PGEPDCPYYMKTQKCKFGFRCKFNHPK 214 5789*********************96 PP
3	zf-CCCH	39.6	8.9e-13	243	267	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG Ck+G++CkF+H++ evm.model.AsparagusV1_05.2823 243 EPICSFYSKTGKCKFGANCKFHHPK 267 799********************96 PP
4	zf-CCCH	36.7	7.3e-12	316	340	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG CkyG++C+F+H+ evm.model.AsparagusV1_05.2823 316 GETDCPFYVKTGSCKYGATCRFNHP 340 6789********************9 PP
5	zf-CCCH	39.4	1e-12	403	424	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++tG+Ck+G+rCkF+H+ evm.model.AsparagusV1_05.2823 403 ACDFYMKTGQCKFGERCKFHHP 424 5********************8 PP
6	zf-CCCH	41.1	3e-13	455	478	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCkyG +C+F H+p evm.model.AsparagusV1_05.2823 455 VACPFYMKTGTCKYGVTCRFDHPP 478 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MAYGGYSSTY GGASSYSSRL SADPYLSSAS RYSNPSAFAS ASEITKYSSS SMDYGSSLYS 60 NQREFGGIGG QSSWAGYDGA GLTSGMKRSA EALYQQNVLG SYNTIGQSDA LFSSNSMFKH 120 PRLETASSLP VYPQRPGEKD CAHYMQTRTC KFGEACKFDH PIWVPEGGIP DWKEVPLVPT 180 TEALPERPGE PDCPYYMKTQ KCKFGFRCKF NHPKDNLNAL TGGGDGMGTG TVDPVLLPER 240 PSEPICSFYS KTGKCKFGAN CKFHHPKDLE IPSSGQNAGA LQQVESAGGD SVPAKTFAPF 300 TPALVHNSKG LPIRPGETDC PFYVKTGSCK YGATCRFNHP DRIAINPPLG GNIGQTVMPS 360 AASLPIGLIN SAANLIPSID PLLAQASLGV SPAVYPQRPG EMACDFYMKT GQCKFGERCK 420 FHHPIDRSAP NASVAQVQPN VKLTLAGLPR REGSVACPFY MKTGTCKYGV TCRFDHPPPG 480 EAIAMATAAQ GSETGVDAEQ N*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MAYGGYSSTY GGASSYSSRL SADPYLSSAS RYSNPSAFAS ASEITKYSSS SMDYGSSLYS  60
NQREFGGIGG QSSWAGYDGA GLTSGMKRSA EALYQQNVLG SYNTIGQSDA LFSSNSMFKH  120
PRLETASSLP VYPQRPGEKD CAHYMQTRTC KFGEACKFDH PIWVPEGGIP DWKEVPLVPT  180
TEALPERPGE PDCPYYMKTQ KCKFGFRCKF NHPKDNLNAL TGGGDGMGTG TVDPVLLPER  240
PSEPICSFYS KTGKCKFGAN CKFHHPKDLE IPSSGQNAGA LQQVESAGGD SVPAKTFAPF  300
TPALVHNSKG LPIRPGETDC PFYVKTGSCK YGATCRFNHP DRIAINPPLG GNIGQTVMPS  360
AASLPIGLIN SAANLIPSID PLLAQASLGV SPAVYPQRPG EMACDFYMKT GQCKFGERCK  420
FHHPIDRSAP NASVAQVQPN VKLTLAGLPR REGSVACPFY MKTGTCKYGV TCRFDHPPPG  480
EAIAMATAAQ GSETGVDAEQ N*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein