PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.2866

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 422aa MW: 46654.6 Da PI: 8.6027

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.2866	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	47	67	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H evm.model.AsparagusV1_05.2866 47 CEICGKGFQRDQNLQLHRRGH 67 *******************88 PP
2	zf-C2H2	14.7	9.2e-05	121	143	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +Cgk + +s+ k H +t+ evm.model.AsparagusV1_05.2866 121 WKCDKCGKKYAVQSDWKAHSKTC 143 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MAAEIISSVS NPPVVKKKRN LPGTPDPDAE VIALSPKTLL ATNRFLCEIC GKGFQRDQNL 60 QLHRRGHNLP WKLRQRSSKE PRKRVYVCPE KGCVHHNSSR ALGDLTGIKK HFCRKHGEKK 120 WKCDKCGKKY AVQSDWKAHS KTCGTREYRC DCGTIFSRRD SFITHRAFCD ALAEETARIS 180 AASNLNNLPP PFNTLNCQLT TPTPHDFTIP DILQPISTNP FKPTGLSLWT DHGPNTAHQN 240 LTSNMHHIEL YGDHQFASLS NAQQLESQLN LLYGNKLLSR SSGELTSTSS AKEFDSSNSL 300 LESVPSLFST QENTYHPPLD TSATALLQKA ALMGVTSSVP PFIRGFDMKM VQSSQCQDGN 360 KFDGLFNIQS NPSLNFDLAS SLENSINDFA VSNTFDVGGE TRDFLGVGVQ TLRSSSINGW 420 I*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MAAEIISSVS NPPVVKKKRN LPGTPDPDAE VIALSPKTLL ATNRFLCEIC GKGFQRDQNL  60
QLHRRGHNLP WKLRQRSSKE PRKRVYVCPE KGCVHHNSSR ALGDLTGIKK HFCRKHGEKK  120
WKCDKCGKKY AVQSDWKAHS KTCGTREYRC DCGTIFSRRD SFITHRAFCD ALAEETARIS  180
AASNLNNLPP PFNTLNCQLT TPTPHDFTIP DILQPISTNP FKPTGLSLWT DHGPNTAHQN  240
LTSNMHHIEL YGDHQFASLS NAQQLESQLN LLYGNKLLSR SSGELTSTSS AKEFDSSNSL  300
LESVPSLFST QENTYHPPLD TSATALLQKA ALMGVTSSVP PFIRGFDMKM VQSSQCQDGN  360
KFDGLFNIQS NPSLNFDLAS SLENSINDFA VSNTFDVGGE TRDFLGVGVQ TLRSSSINGW  420
I*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-123	C2H2 family protein