PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.3196

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 455aa MW: 49660.1 Da PI: 7.462

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.3196	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.4	1.6e-10	54	77	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++rtG C yG++C+++H+ evm.model.AsparagusV1_05.3196 54 APDCIYYLRTGLCGYGSNCRYNHP 77 589********************9 PP
2	zf-CCCH	36.5	8.1e-12	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtCk+G++Ck++H++ evm.model.AsparagusV1_05.3196 96 QPDCQYFLKTGTCKFGATCKYHHPR 120 789********************96 PP
3	zf-CCCH	32.1	2e-10	142	165	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ evm.model.AsparagusV1_05.3196 142 KSCPYYMRTGSCKFGFACKFNHPQ 165 66********************97 PP
4	zf-CCCH	40	6.3e-13	282	307	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+CkyG +Ck++H++ evm.model.AsparagusV1_05.3196 282 DQPECQYYMKTGICKYGTTCKYHHPK 307 689*********************96 PP
5	zf-CCCH	27.3	6.1e-09	326	351	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ +G C++G+ Ck+ H+ evm.model.AsparagusV1_05.3196 326 PGHPACTSYSLYGSCRFGAACKYDHP 351 57899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MPDHGEFQNN VVSSSSNGAA PENLEDAIWR LKVEDSKQEG LDGNQNLYPD RPGAPDCIYY 60 LRTGLCGYGS NCRYNHPTYN GQGTQDRAEL PERVGQPDCQ YFLKTGTCKF GATCKYHHPR 120 DRHDVRPASL NILGLPMRQD EKSCPYYMRT GSCKFGFACK FNHPQPATLG PVFPVTPPSA 180 YGPTGSSVAP PSSLPVIGGL SAWPSARPYL TSPRMQGLPA YMPVVLPSSQ GAMSMQQGWT 240 AYTGSASQFP STDSFGPTQV PNPKLHAQSA SSTAINLPER PDQPECQYYM KTGICKYGTT 300 CKYHHPKERW SESPPTLGPL GLPLRPGHPA CTSYSLYGSC RFGAACKYDH PLMGFYNYAM 360 PTYSVPDPSA LFPPNHSNSP QVTWASASEA SFSKTLRLPD RLQKSDEKNN KEANATSHDN 420 NDRVNDPPPT QKTSPSTDNA PSTDSTENTQ NHSD*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MPDHGEFQNN VVSSSSNGAA PENLEDAIWR LKVEDSKQEG LDGNQNLYPD RPGAPDCIYY  60
LRTGLCGYGS NCRYNHPTYN GQGTQDRAEL PERVGQPDCQ YFLKTGTCKF GATCKYHHPR  120
DRHDVRPASL NILGLPMRQD EKSCPYYMRT GSCKFGFACK FNHPQPATLG PVFPVTPPSA  180
YGPTGSSVAP PSSLPVIGGL SAWPSARPYL TSPRMQGLPA YMPVVLPSSQ GAMSMQQGWT  240
AYTGSASQFP STDSFGPTQV PNPKLHAQSA SSTAINLPER PDQPECQYYM KTGICKYGTT  300
CKYHHPKERW SESPPTLGPL GLPLRPGHPA CTSYSLYGSC RFGAACKYDH PLMGFYNYAM  360
PTYSVPDPSA LFPPNHSNSP QVTWASASEA SFSKTLRLPD RLQKSDEKNN KEANATSHDN  420
NDRVNDPPPT QKTSPSTDNA PSTDSTENTQ NHSD*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	3e-89	C3H family protein