PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.3507
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HD-ZIP
Protein Properties Length: 205aa    MW: 23461.5 Da    PI: 8.1209
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.3507genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-1980132456
                                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                       Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                    + ++++eq++ Le+ F+++++++  +++eLA+kl+L  rq+ vWFqNrRa+ k
  evm.model.AsparagusV1_05.3507  80 KLRLSPEQVTLLEDTFREHNTLNGFQKQELAEKLNLRPRQIEVWFQNRRARNK 132
                                    56789**********************************************98 PP
2HD-ZIP_I/II114.18.4e-3778169192
                    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                    +kk+rls eqv+lLE++F+e+++L+  +K+ela++L+l+prq++vWFqnrRAR k+kq+E+d++ Lk+++++l+een+rL
  evm.model.AsparagusV1_05.3507  78 NKKLRLSPEQVTLLEDTFREHNTLNGFQKQELAEKLNLRPRQIEVWFQNRRARNKLKQMEVDFQLLKKWCETLNEENRRL 157
                                    59****************************************************************************** PP

                    HD-ZIP_I/II  81 ekeveeLreelk 92 
                                    +ke +eL+ ++k
  evm.model.AsparagusV1_05.3507 158 KKELQELKLRVK 169
                                    *******98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MEGGHDHIEE SKIGLGLAIG SHENYPISHD HKLHILFPPK KEGEGEEKDR QRKRSQSMDR  60
DDDESIAKEN RSGGGGGNKK LRLSPEQVTL LEDTFREHNT LNGFQKQELA EKLNLRPRQI  120
EVWFQNRRAR NKLKQMEVDF QLLKKWCETL NEENRRLKKE LQELKLRVKQ PEGSVLHLDL  180
PPKVDPGAPT CKKCTSGDSS IANE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954DRQRKR
2127135RRARNKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.18e-30HD-ZIP family protein