PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.3567

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

Trihelix

Protein Properties

Length: 254aa MW: 28141.8 Da PI: 5.0033

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.3567	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.7	1.7e-09	2	40	34	72
trihelix 34 vskkmrergferspkqCkekwenlnkrykkikegekkrt 72 +s+++ + +++rs+ qCk++we+l +ykki+ +e + + evm.model.AsparagusV1_05.3567 2 ISDNCVSMKVNRSSSQCKKRWESLLSDYKKITIWEASIS 40 8999******************************99863 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MISDNCVSMK VNRSSSQCKK RWESLLSDYK KITIWEASIS ASAYGPYWSL KPGRRRQLRL 60 PYSFDQQVFC SVDAVIKAQE ARIASSATDT DSEDLIGLHE EDKSSGGSQG MVEAEASDPD 120 YIISMPEAKC QAKEVISRLE AEMAEADADL GPEKTGTDTT KNTNKEHEIT NKLKENAKEI 180 HAILRGELPD NVNRGCGLVE LTKRNAAETE FTRRQADELI KAFGVLARTL NQFKELIKDG 240 ECKEISLMSP MAL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	60	GRRRQLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	1e-18	Trihelix family protein