PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.3569

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

M-type_MADS

Protein Properties

Length: 654aa MW: 74185.1 Da PI: 9.0976

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.3569	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71	1e-22	19	63	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 krien+ rqv fskRr+g++KKA+ELS+LC+a+v++++fs+ gk evm.model.AsparagusV1_05.3569 19 KRIENEESRQVCFSKRRAGLFKKANELSILCGAQVSLLVFSPAGK 63 79*****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MATKRQRKPS IGRQKIEIKR IENEESRQVC FSKRRAGLFK KANELSILCG AQVSLLVFSP 60 AGKPFSFGHP SVDYVVDRYL MGRANGPREN TSTSRGVTLN VSGLNERYSS LTAKYEAEKK 120 RKGELERVMK EVWLGDGQLD GVGLEGLEWL KMRLEGLKRE VEVVMMSHQR VAPPPTTFEF 180 CMAGNPVPYH RGYLGNFGQN QGQLYLPPPP STLPFINDDS IMANGSNGFG YGEDYEEWLK 240 IDSIVTTSSL VIAIILAFSL PLLLLLLRRS NGSNISNSNT PPGPISFPVF GNWLQVGNDL 300 NHRYLAQLSR THGPVFLLKL GSRNLVVVSD PKLATQVLHT QGVEFGSRPR NVVFDIFTGN 360 GQDMVFTVYG DHWRKMRRIM TLPFFTNRVV NQYSPMWEQE MDLVVRDLFG DPEQAEKGMV 420 IRKRLQLMLY NIMYGMMFDA RFESQSDPLF QQATKFNSER SRLAQSFDYN YGDFIPILRP 480 FLRGYLNKCR DLQSRRLAFF NGHYVEHRRK VMASNDDRQK LRCAIDHILE AEKNGEISSE 540 NVLYIVENIN VAAIETTLWS MEWAIAELVN HPRVQGKLRQ EVFDVLGREG RPVVTEANLA 600 QLPYLQAVVK ETLRLHTPIP LLVPHMNLEE AKLGEYSIPR ESGCGSLVAG EQP*

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MATKRQRKPS IGRQKIEIKR IENEESRQVC FSKRRAGLFK KANELSILCG AQVSLLVFSP  60
AGKPFSFGHP SVDYVVDRYL MGRANGPREN TSTSRGVTLN VSGLNERYSS LTAKYEAEKK  120
RKGELERVMK EVWLGDGQLD GVGLEGLEWL KMRLEGLKRE VEVVMMSHQR VAPPPTTFEF  180
CMAGNPVPYH RGYLGNFGQN QGQLYLPPPP STLPFINDDS IMANGSNGFG YGEDYEEWLK  240
IDSIVTTSSL VIAIILAFSL PLLLLLLRRS NGSNISNSNT PPGPISFPVF GNWLQVGNDL  300
NHRYLAQLSR THGPVFLLKL GSRNLVVVSD PKLATQVLHT QGVEFGSRPR NVVFDIFTGN  360
GQDMVFTVYG DHWRKMRRIM TLPFFTNRVV NQYSPMWEQE MDLVVRDLFG DPEQAEKGMV  420
IRKRLQLMLY NIMYGMMFDA RFESQSDPLF QQATKFNSER SRLAQSFDYN YGDFIPILRP  480
FLRGYLNKCR DLQSRRLAFF NGHYVEHRRK VMASNDDRQK LRCAIDHILE AEKNGEISSE  540
NVLYIVENIN VAAIETTLWS MEWAIAELVN HPRVQGKLRQ EVFDVLGREG RPVVTEANLA  600
QLPYLQAVVK ETLRLHTPIP LLVPHMNLEE AKLGEYSIPR ESGCGSLVAG EQP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	9e-32	M-type_MADS family protein