PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_05.64

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

FAR1

Protein Properties

Length: 385aa MW: 42798.4 Da PI: 9.0028

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_05.64	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.9	1e-15	49	129	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fY+eY+k+ GF v +++s+k+ +g++ + + C k gk+ +e + r++ +t+C ak+ k++ dg ++++++ evm.model.AsparagusV1_05.64 49 QFYKEYGKQKGFGVMIKHSNKR-ADGRCRRLVLSCCKGGKAPDEPS--------RPSAKTDCGAKIIAKLWADGLLHLIEVD 121 6***************9997.8999********9998765........59********************** PP FAR1 83 leHnHela 90 +eHnH+++ evm.model.AsparagusV1_05.64 122 NEHNHPVS 129 ***987 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MEQTSSGELA IITYNADERA VDKEDPHRET PSQEPSVGMA FESHEEVYQF YKEYGKQKGF 60 GVMIKHSNKR ADGRCRRLVL SCCKGGKAPD EPSRPSAKTD CGAKIIAKLW ADGLLHLIEV 120 DNEHNHPVSP LHAHSVRYSE KLPNGGRKRR KHNHESGVNS VHLYPSVIVQ GGGYENLVFG 180 QKGREIMGGV VWGTKPIIKV AAICGSLRKG SFNRALLHSA IQLSKESIGG LQIEYVDISS 240 LPFLNTDLEV NGRYPPPVEA FRQNIFEADS ILFASPEYNY SLTGPLKNAI DWASRPPNFW 300 ANKPAAIISA GGNFGGGRSQ YHLRQVGVYL DIHFINKPEL FVKVYEPPAK FDSHGNLIDT 360 ETRERLKQVL LSLQSFTYKQ QSRS*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MEQTSSGELA IITYNADERA VDKEDPHRET PSQEPSVGMA FESHEEVYQF YKEYGKQKGF  60
GVMIKHSNKR ADGRCRRLVL SCCKGGKAPD EPSRPSAKTD CGAKIIAKLW ADGLLHLIEV  120
DNEHNHPVSP LHAHSVRYSE KLPNGGRKRR KHNHESGVNS VHLYPSVIVQ GGGYENLVFG  180
QKGREIMGGV VWGTKPIIKV AAICGSLRKG SFNRALLHSA IQLSKESIGG LQIEYVDISS  240
LPFLNTDLEV NGRYPPPVEA FRQNIFEADS ILFASPEYNY SLTGPLKNAI DWASRPPNFW  300
ANKPAAIISA GGNFGGGRSQ YHLRQVGVYL DIHFINKPEL FVKVYEPPAK FDSHGNLIDT  360
ETRERLKQVL LSLQSFTYKQ QSRS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	8e-12	FAR1 family protein