PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_06.119
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family NF-YC
Protein Properties Length: 165aa    MW: 18741.4 Da    PI: 4.2951
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_06.119genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC160.13.4e-50201231101
                         NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksd 78 
                                   ql++fwe+q   ie+ +++knh+lPlarikki+k+de+v+mi+ e+Pvl+s+ace+file+t+r+w ++e  +rrtl+k+d
  evm.model.AsparagusV1_06.119  20 QLQAFWENQktdIENLEEMKNHSLPLARIKKIMKSDEEVRMIAGEVPVLFSRACEMFILEMTMRAWSNTERHRRRTLQKCD 100
                                   89******99999******************************************************************** PP

                         NF-YC  79 iaaavtrtdifdflvdivprdel 101
                                   +aaav++tdifdflvdivprd++
  evm.model.AsparagusV1_06.119 101 VAAAVAQTDIFDFLVDIVPRDDV 123
                                   *********************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MDRLELPMVL PFPDQQLSVQ LQAFWENQKT DIENLEEMKN HSLPLARIKK IMKSDEEVRM  60
IAGEVPVLFS RACEMFILEM TMRAWSNTER HRRRTLQKCD VAAAVAQTDI FDFLVDIVPR  120
DDVKEEEAPA EAPVSYCFLP GQPGVTLVDN GWEVEESGSK SDGE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.31e-51NF-YC family protein