PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_06.1674
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 231aa    MW: 26674.9 Da    PI: 4.9797
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_06.1674genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF405.1e-13955450
                                   -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                         SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                   +n + r  tf kR  ++ K A ELS LC++  ++i+f+++ ++ +++
  evm.model.AsparagusV1_06.1674  9 DNARLRRATFRKRERTLKKNARELSALCGTPTLLILFGPEEEIITWP 55
                                   68999*****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MSSDIALKDN ARLRRATFRK RERTLKKNAR ELSALCGTPT LLILFGPEEE IITWPEKLCE  60
TKDIIKEYQE LSRHASNKHN FTLSDYLQRR KMKDHERTTT RVDDITSFEE AKEAIRSIDS  120
TLKEVEKRMN FLSLDKNLEN AAIEEEEIEP NFEFGSVLTH NSDEDGDDTM EEFASTSTEE  180
NTKQIASTST EENMKKITSR EEKGKEITSA LTKERMQTVR LFGKEITVRE *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.15e-09M-type_MADS family protein