PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_06.1945

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

FAR1

Protein Properties

Length: 725aa MW: 82871.4 Da PI: 7.7745

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_06.1945	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.8	2e-19	78	171	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkw 76 ++Y ++A++ GF +r+++sk + ++ ++kr++vC + g + ++k+++ k++r+++++r++C+a++ +kk+ ++w evm.model.AsparagusV1_06.1945 78 EYYTNFARKNGFAIRRERSKGNpSHPLGVYKRELVCHRAGISLPRKTAELKRQRNKKSSRCKCEAQMIIKKNVskgVSRW 157 69**************9999766667****************99999***************98766789 PP FAR1 77 evtkleleHnHela 90 +v ++++ HnHel evm.model.AsparagusV1_06.1945 158 MVVHFSNVHNHELL 171 ************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MTKTSSRNNG CLTQRRECPC GDSKCILKVE GEDDDPVVES SVEPSFPQAI TQIPQEIVSV 60 DTPPYVGQSF QTDDEAQEYY TNFARKNGFA IRRERSKGNP SHPLGVYKRE LVCHRAGISL 120 PRKTAELKRQ RNKKSSRCKC EAQMIIKKNV SKGVSRWMVV HFSNVHNHEL LDSEEVRHLP 180 AYRNISSIDR EHILALAKNG LSVGTIMRTI EVEKGVKPRQ LTFTERDLRN FLQASKNINR 240 ENEGAELLNA CKAMSDKNMD FRYDFTLDEN NKLEHIAWSY PDSIHAYKVF GDVVVFDTSY 300 RLYAYDRPVG VWFGVDNYGN AIFFGCVLLQ NEKQESLGWA LQSFLHLVDG KFPRTMLTDF 360 DIRLRDAMIS EMPGTKHVFG MWHVTSKLSS WFAASLGSQY DKFVSEFHRL GNLESPEEFD 420 QLWRQMAVDF GLSLDKHVGI LWYHRTYWAL PHLRGFFFGG LLTTGLPVSM KSFFKGFLTS 480 KIHLKDFIDQ VAVAIELQNQ AGEEATMRQN YQNIKAKTCM PIEEQALNIL TPYAFDWFQK 540 ELIASNQFAV FETPRQSYLV RHRLQSDGGH LVSCNDSDEN IECTCQEFEA SGILCRHSLR 600 VLQLKNCFVL PDKYLLPRWR RECSLFPRSS GYSYRSLALR SLASIIIQES SITKDRFDYV 660 QWHMSKLLGH VRDMPNVEDL GSDVDQGCSS LDATVPVVSS MKSCGRGRPK KMKGVVEEVP 720 MESS*

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MTKTSSRNNG CLTQRRECPC GDSKCILKVE GEDDDPVVES SVEPSFPQAI TQIPQEIVSV  60
DTPPYVGQSF QTDDEAQEYY TNFARKNGFA IRRERSKGNP SHPLGVYKRE LVCHRAGISL  120
PRKTAELKRQ RNKKSSRCKC EAQMIIKKNV SKGVSRWMVV HFSNVHNHEL LDSEEVRHLP  180
AYRNISSIDR EHILALAKNG LSVGTIMRTI EVEKGVKPRQ LTFTERDLRN FLQASKNINR  240
ENEGAELLNA CKAMSDKNMD FRYDFTLDEN NKLEHIAWSY PDSIHAYKVF GDVVVFDTSY  300
RLYAYDRPVG VWFGVDNYGN AIFFGCVLLQ NEKQESLGWA LQSFLHLVDG KFPRTMLTDF  360
DIRLRDAMIS EMPGTKHVFG MWHVTSKLSS WFAASLGSQY DKFVSEFHRL GNLESPEEFD  420
QLWRQMAVDF GLSLDKHVGI LWYHRTYWAL PHLRGFFFGG LLTTGLPVSM KSFFKGFLTS  480
KIHLKDFIDQ VAVAIELQNQ AGEEATMRQN YQNIKAKTCM PIEEQALNIL TPYAFDWFQK  540
ELIASNQFAV FETPRQSYLV RHRLQSDGGH LVSCNDSDEN IECTCQEFEA SGILCRHSLR  600
VLQLKNCFVL PDKYLLPRWR RECSLFPRSS GYSYRSLALR SLASIIIQES SITKDRFDYV  660
QWHMSKLLGH VRDMPNVEDL GSDVDQGCSS LDATVPVVSS MKSCGRGRPK KMKGVVEEVP  720
MESS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein